Biology
The Biology domain studies how living structure and biological organization may arise within Coherence Geometry from phase alignment, local compatibility, transport, constraint, and coherent refinement. Rather than treating biological form only as the output of fixed molecular machinery or learned statistical patterns, this domain investigates how folding, morphogenesis, cellular organization, signaling, and functional structure can emerge from interacting coherence fields across scales.
Research Topics
Coherence-geometric studies of folding, helicity, molecular alignment, transport, residue/base compatibility, and structural organization in biological molecules.
Publication List
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Emergent Duplex Helicity from Coherence Alignment and Transport
CGI-RSR-000028 | Helical structures are commonly modeled by prescribing a rotational geometry, a preferred twist angle, or an equivalent geometric construction rule. In this work, we investigate an alternative approach in which helicity emerges from local coherence dynamics rather than from an explicitly imposed helical instruction.
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Deterministic Protein Folding from Coherence Fields
CGI-RSR-000026 | We present a deterministic, geometry-based model of protein folding using a novel variational framework called coherence geometry (CG). In this system, residues are modeled as local phase agents embedded in a spatial field, each carrying internal biases that reflect their chemical identities. The chain folds not through stochastic search or learned potentials, but…